Source documentation
====================

atom.py
-------

.. automodule:: protutils.atom

.. autoclass:: protutils.atom.Atom
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:

.. autoclass:: protutils.atom.AtomCollection
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:


bgf.py
------

.. automodule:: protutils.bgf

.. autoclass:: protutils.bgf.BGFAtom
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:

.. autoclass:: protutils.bgf.BGFFile
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:


pdb.py
------

.. automodule:: protutils.pdb

.. autoclass:: protutils.pdb.PDBAtom
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:

.. autoclass:: protutils.pdb.PDBFile
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:

.. autoclass:: protutils.pdb.PDBResidue
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:

.. autoclass:: protutils.pdb.PDBResidues
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:


pqr.py
------

.. automodule:: protutils.pqr

.. autoclass:: protutils.pqr.PQRAtom
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:

.. autoclass:: protutils.pqr.PQRFile
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:


residue.py
----------

.. automodule:: protutils.residue

.. autoclass:: protutils.residue.Residue
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance:

.. autoclass:: protutils.residue.Residues
    :members:
    :undoc-members:
    :special-members:
    :show-inheritance: